PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04629.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25596.4 Da    PI: 8.6279
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04629.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.7e-28959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+i+fs tgkl+eyss
  Jcr4S04629.20  9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSS 59
                   68***********************************************96 PP

2K-box52.32.5e-18871711599
          K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                    +  + ++a+L ke+ +  +++R++ GedL  L+++eLqqLe+ Le++l+++ ++K e ++++i+ l kk ++l eenk+L++k++
  Jcr4S04629.20  87 QLENSNHARLSKEVAEKTHQLRQMRGEDLRGLNVEELQQLEKMLESGLTRVLETKGERIMNEISALEKKGEQLLEENKQLKQKMM 171
                    556778999******999*****************************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.109161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-39160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-31373IPR002100Transcription factor, MADS-box
PfamPF003192.4E-251057IPR002100Transcription factor, MADS-box
CDDcd002653.88E-331275No hitNo description
PRINTSPR004044.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.24386176IPR002487Transcription factor, K-box
PfamPF014863.0E-1690170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD AEVALIVFSA TGKLFEYSSS  60
SMKDIIARYN LHSNNIDKLG RPSLELQLEN SNHARLSKEV AEKTHQLRQM RGEDLRGLNV  120
EELQQLEKML ESGLTRVLET KGERIMNEIS ALEKKGEQLL EENKQLKQKM MNLCKGKRVV  180
ESDIRLQEEG LSSESVTNVC SCTSGPPLED DSSDTSLKLG LPFWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S3e-19173173Myocyte-specific enhancer factor 2B
1tqe_R3e-19173173Myocyte-specific enhancer factor 2B
1tqe_Q3e-19173173Myocyte-specific enhancer factor 2B
1tqe_P3e-19173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067997.11e-163PREDICTED: MADS-box protein AGL24-like isoform X1
RefseqXP_012067998.11e-163PREDICTED: MADS-box protein AGL24-like isoform X1
RefseqXP_012067999.11e-163PREDICTED: MADS-box protein AGL24-like isoform X1
RefseqXP_012068001.11e-163PREDICTED: MADS-box protein AGL24-like isoform X1
SwissprotQ9FVC11e-100SVP_ARATH; MADS-box protein SVP
TrEMBLA0A061FLR31e-135A0A061FLR3_THECC; K-box region and MADS-box transcription factor family protein
STRINGVIT_18s0001g07460.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-101MIKC_MADS family protein